diff --git a/docs/generated/packages/angular/executors/ng-packagr-lite.json b/docs/generated/packages/angular/executors/ng-packagr-lite.json
index 306a1c5092..83213a14c7 100644
--- a/docs/generated/packages/angular/executors/ng-packagr-lite.json
+++ b/docs/generated/packages/angular/executors/ng-packagr-lite.json
@@ -16,11 +16,7 @@
       },
       {
         "name": "Updating Project Dependencies for Buildable Library",
-        "keys": [
-          "project",
-          "updateBuildableProjectDepsInPackageJson",
-          "buildableProjectDepsInPackageJsonType"
-        ]
+        "keys": ["project"]
       }
     ],
     "properties": {
@@ -43,13 +39,15 @@
       "updateBuildableProjectDepsInPackageJson": {
         "type": "boolean",
         "description": "Whether to update the buildable project dependencies in the build output package.json.",
-        "default": false
+        "default": false,
+        "x-deprecated": "Configure the project to use the '@nx/dependency-checks' ESLint rule instead (https://nx.dev/packages/eslint-plugin/documents/dependency-checks). It will be removed in v17."
       },
       "buildableProjectDepsInPackageJsonType": {
         "type": "string",
         "description": "When `updateBuildableProjectDepsInPackageJson` is `true`, this adds dependencies to either `peerDependencies` or `dependencies`.",
         "enum": ["dependencies", "peerDependencies"],
-        "default": "peerDependencies"
+        "default": "peerDependencies",
+        "x-deprecated": "Configure the '@nx/dependency-checks' ESLint rule instead (https://nx.dev/packages/eslint-plugin/documents/dependency-checks). It will be removed in v17."
       },
       "tailwindConfig": {
         "type": "string",
diff --git a/docs/generated/packages/angular/executors/package.json b/docs/generated/packages/angular/executors/package.json
index a6cbc49aa1..a99e9c7cac 100644
--- a/docs/generated/packages/angular/executors/package.json
+++ b/docs/generated/packages/angular/executors/package.json
@@ -20,9 +20,7 @@
       {
         "name": "Updating Project Dependencies for Publishable Library",
         "keys": [
-          "project",
-          "updateBuildableProjectDepsInPackageJson",
-          "buildableProjectDepsInPackageJsonType"
+          "project"
         ]
       }
     ],
@@ -46,7 +44,8 @@
       "updateBuildableProjectDepsInPackageJson": {
         "type": "boolean",
         "description": "Whether to update the buildable project dependencies in the build output package.json.",
-        "default": false
+        "default": false,
+        "x-deprecated": "Configure the project to use the '@nx/dependency-checks' ESLint rule instead (https://nx.dev/packages/eslint-plugin/documents/dependency-checks). It will be removed in v17."
       },
       "buildableProjectDepsInPackageJsonType": {
         "type": "string",
@@ -55,7 +54,8 @@
           "dependencies",
           "peerDependencies"
         ],
-        "default": "peerDependencies"
+        "default": "peerDependencies",
+        "x-deprecated": "Configure the project to use the '@nx/dependency-checks' ESLint rule instead (https://nx.dev/packages/eslint-plugin/documents/dependency-checks). It will be removed in v17."
       },
       "tailwindConfig": {
         "type": "string",
diff --git a/docs/generated/packages/js/executors/swc.json b/docs/generated/packages/js/executors/swc.json
index 1578c85eb9..8d34b0241c 100644
--- a/docs/generated/packages/js/executors/swc.json
+++ b/docs/generated/packages/js/executors/swc.json
@@ -98,13 +98,15 @@
       "updateBuildableProjectDepsInPackageJson": {
         "type": "boolean",
         "description": "Whether to update the buildable project dependencies in the build output package.json.",
-        "default": false
+        "default": false,
+        "x-deprecated": "Configure the project to use the '@nx/dependency-checks' ESLint rule instead (https://nx.dev/packages/eslint-plugin/documents/dependency-checks). It will be removed in v17."
       },
       "buildableProjectDepsInPackageJsonType": {
         "type": "string",
         "description": "When `updateBuildableProjectDepsInPackageJson` is `true`, this adds dependencies to either `peerDependencies` or `dependencies`.",
         "enum": ["dependencies", "peerDependencies"],
-        "default": "peerDependencies"
+        "default": "peerDependencies",
+        "x-deprecated": "Configure the project to use the '@nx/dependency-checks' ESLint rule instead (https://nx.dev/packages/eslint-plugin/documents/dependency-checks). It will be removed in v17."
       },
       "external": {
         "description": "A list projects to be treated as external. This feature is experimental",
diff --git a/docs/generated/packages/js/executors/tsc.json b/docs/generated/packages/js/executors/tsc.json
index 61f9e1b61d..f69b076c19 100644
--- a/docs/generated/packages/js/executors/tsc.json
+++ b/docs/generated/packages/js/executors/tsc.json
@@ -98,13 +98,15 @@
       "updateBuildableProjectDepsInPackageJson": {
         "type": "boolean",
         "description": "Whether to update the buildable project dependencies in the build output package.json.",
-        "default": false
+        "default": false,
+        "x-deprecated": "Configure the project to use the '@nx/dependency-checks' ESLint rule instead (https://nx.dev/packages/eslint-plugin/documents/dependency-checks). It will be removed in v17."
       },
       "buildableProjectDepsInPackageJsonType": {
         "type": "string",
         "description": "When `updateBuildableProjectDepsInPackageJson` is `true`, this adds dependencies to either `peerDependencies` or `dependencies`.",
         "enum": ["dependencies", "peerDependencies"],
-        "default": "peerDependencies"
+        "default": "peerDependencies",
+        "x-deprecated": "Configure the project to use the '@nx/dependency-checks' ESLint rule instead (https://nx.dev/packages/eslint-plugin/documents/dependency-checks). It will be removed in v17."
       },
       "external": {
         "description": "A list projects to be treated as external. This feature is experimental",
diff --git a/docs/generated/packages/rollup/executors/rollup.json b/docs/generated/packages/rollup/executors/rollup.json
index 0034da2d0f..7d9fbf88ae 100644
--- a/docs/generated/packages/rollup/executors/rollup.json
+++ b/docs/generated/packages/rollup/executors/rollup.json
@@ -8,19 +8,6 @@
     "description": "Packages a library for different web usages (ESM, CommonJS).",
     "cli": "nx",
     "type": "object",
-    "presets": [
-      {
-        "name": "Including Dependencies in package.json",
-        "keys": [
-          "main",
-          "outputPath",
-          "project",
-          "tsConfig",
-          "buildableProjectDepsInPackageJsonType",
-          "updateBuildableProjectDepsInPackageJson"
-        ]
-      }
-    ],
     "properties": {
       "project": {
         "type": "string",
@@ -84,13 +71,15 @@
       "updateBuildableProjectDepsInPackageJson": {
         "type": "boolean",
         "description": "Update buildable project dependencies in `package.json`.",
-        "default": false
+        "default": false,
+        "x-deprecated": "Configure the project to use the '@nx/dependency-checks' ESLint rule instead (https://nx.dev/packages/eslint-plugin/documents/dependency-checks). It will be removed in v17."
       },
       "buildableProjectDepsInPackageJsonType": {
         "type": "string",
         "description": "When `updateBuildableProjectDepsInPackageJson` is `true`, this adds dependencies to either `peerDependencies` or `dependencies`.",
         "enum": ["dependencies", "peerDependencies"],
-        "default": "peerDependencies"
+        "default": "peerDependencies",
+        "x-deprecated": "Configure the project to use the '@nx/dependency-checks' ESLint rule instead (https://nx.dev/packages/eslint-plugin/documents/dependency-checks). It will be removed in v17."
       },
       "rollupConfig": {
         "oneOf": [
@@ -203,7 +192,8 @@
         ]
       }
     },
-    "examplesFile": "{% tabs %}\n{% tab label=\"Including Dependencies\" %}\nTo include dependencies in the output `package.json`, the dependencies must be installed as a **dependencies** in the root `package.json`\n\n```json {% fileName=\"package.json\" %}\n{\n  \"dependencies\": {\n    \"some-dependency\": \"^1.0.0\"\n  }\n}\n```\n\nTo have dependencies in the be listed in the final `package.json` of your project, set the `updateBuildableProjectDepsInPackageJson` option to `true`. After than dependencies will be added to the `peerDependencies` field of the output `package.json`. You can use `buildableProjectDepsInPackageJsonType` option to change which field the dependencies are output to.\n\n```json {% fileName=\"project.json\" %}\n{\n  \"targets\": {\n    \"build\": {\n      \"executor\": \"@nx/rollup:rollup\",\n      \"options\": {\n        \"buildableProjectDepsInPackageJsonType\": \"dependencies\",\n        \"updateBuildableProjectDepsInPackageJson\": true\n      }\n    }\n  }\n}\n```\n\n{% /tab %}\n\n{% tab label=\"Using `babelUpwardRootMode`\" %}\n\nCopying from the [Babel documentation](https://babeljs.io/docs/config-files#root-babelconfigjson-file):\n\n> [...] if you are running your Babel compilation process from within a subpackage, you need to tell Babel where to look for the config. There are a few ways to do that, but the recommended way is the \"rootMode\" option with \"upward\", which will make Babel search from the working directory upward looking for your babel.config.json file, and will use its location as the \"root\" value.\n\nSetting `babelUpwardRootMode` to `true` in your `project.json` will set `rootMode` option to `upward` in the Babel config. You may want the `upward` mode in a monorepo when projects must apply their individual `.babelrc` file. We recommend that you don't set it at all, so it will use the default to `false` as the `upward` mode brings additional complexity to the build process.\n\n```json\n//...\n\"my-app\": {\n  \"targets\": {\n    \"build\": {\n      \"executor\": \"@nx/rollup:rollup\",\n      \"options\": {\n          \"babelUpwardRootMode\": true,\n          //...\n      },\n      //...\n    },\n    //...\n  },\n  //...\n}\n```\n\nWhen `babelUpwardRootMode` is `true`, Babel will look for a root `babel.config.json` at the root of the workspace, which should look something like this to include all packages:\n\n```json\n{ \"babelrcRoots\": [\"*\"] }\n```\n\nThen for each package, you must have a `.babelrc` file that will be applied to that package. For example:\n\n```json\n{\n  \"presets\": [\"@babel/preset-env\", \"@babel/preset-typescript\"]\n}\n```\n\nAll packages will use its own `.babelrc` file, thus you must ensure the right presets and plugins are set in each config file. This behavior can lead to build discrepancies between packages, so we recommend that you don't set `babelUpwardRootMode` at all.\n\n```treeview\n├── packages\n│   ├── a\n│   │   └── .babelrc\n│   └── b\n│       └── .babelrc\n└── babel.config.json\n```\n\nIn workspace above, if `a` imports `b`, it will apply the config `packages/b/.babelrc` and not apply its own `packages/a/.babelrc` to `b`. Anything in `babel.config.json` will apply to all packages.\n\n{% /tab %}\n\n{% /tabs %}\n"
+    "examplesFile": "{% tabs %}\n{% tab label=\"Including Dependencies\" %}\nTo include dependencies in the output `package.json`, the dependencies must be installed as a **dependencies** in the root `package.json`\n\n```json {% fileName=\"package.json\" %}\n{\n  \"dependencies\": {\n    \"some-dependency\": \"^1.0.0\"\n  }\n}\n```\n\nTo have dependencies in the be listed in the final `package.json` of your project, set the `updateBuildableProjectDepsInPackageJson` option to `true`. After than dependencies will be added to the `peerDependencies` field of the output `package.json`. You can use `buildableProjectDepsInPackageJsonType` option to change which field the dependencies are output to.\n\n```json {% fileName=\"project.json\" %}\n{\n  \"targets\": {\n    \"build\": {\n      \"executor\": \"@nx/rollup:rollup\",\n      \"options\": {\n        \"buildableProjectDepsInPackageJsonType\": \"dependencies\",\n        \"updateBuildableProjectDepsInPackageJson\": true\n      }\n    }\n  }\n}\n```\n\n{% /tab %}\n\n{% tab label=\"Using `babelUpwardRootMode`\" %}\n\nCopying from the [Babel documentation](https://babeljs.io/docs/config-files#root-babelconfigjson-file):\n\n> [...] if you are running your Babel compilation process from within a subpackage, you need to tell Babel where to look for the config. There are a few ways to do that, but the recommended way is the \"rootMode\" option with \"upward\", which will make Babel search from the working directory upward looking for your babel.config.json file, and will use its location as the \"root\" value.\n\nSetting `babelUpwardRootMode` to `true` in your `project.json` will set `rootMode` option to `upward` in the Babel config. You may want the `upward` mode in a monorepo when projects must apply their individual `.babelrc` file. We recommend that you don't set it at all, so it will use the default to `false` as the `upward` mode brings additional complexity to the build process.\n\n```json\n//...\n\"my-app\": {\n  \"targets\": {\n    \"build\": {\n      \"executor\": \"@nx/rollup:rollup\",\n      \"options\": {\n          \"babelUpwardRootMode\": true,\n          //...\n      },\n      //...\n    },\n    //...\n  },\n  //...\n}\n```\n\nWhen `babelUpwardRootMode` is `true`, Babel will look for a root `babel.config.json` at the root of the workspace, which should look something like this to include all packages:\n\n```json\n{ \"babelrcRoots\": [\"*\"] }\n```\n\nThen for each package, you must have a `.babelrc` file that will be applied to that package. For example:\n\n```json\n{\n  \"presets\": [\"@babel/preset-env\", \"@babel/preset-typescript\"]\n}\n```\n\nAll packages will use its own `.babelrc` file, thus you must ensure the right presets and plugins are set in each config file. This behavior can lead to build discrepancies between packages, so we recommend that you don't set `babelUpwardRootMode` at all.\n\n```treeview\n├── packages\n│   ├── a\n│   │   └── .babelrc\n│   └── b\n│       └── .babelrc\n└── babel.config.json\n```\n\nIn workspace above, if `a` imports `b`, it will apply the config `packages/b/.babelrc` and not apply its own `packages/a/.babelrc` to `b`. Anything in `babel.config.json` will apply to all packages.\n\n{% /tab %}\n\n{% /tabs %}\n",
+    "presets": []
   },
   "description": "Bundle a package using Rollup.",
   "aliases": [],
diff --git a/packages/angular/src/executors/ng-packagr-lite/schema.json b/packages/angular/src/executors/ng-packagr-lite/schema.json
index 2051bb28a8..05f38f9ea2 100644
--- a/packages/angular/src/executors/ng-packagr-lite/schema.json
+++ b/packages/angular/src/executors/ng-packagr-lite/schema.json
@@ -13,11 +13,7 @@
     },
     {
       "name": "Updating Project Dependencies for Buildable Library",
-      "keys": [
-        "project",
-        "updateBuildableProjectDepsInPackageJson",
-        "buildableProjectDepsInPackageJsonType"
-      ]
+      "keys": ["project"]
     }
   ],
   "properties": {
@@ -40,13 +36,15 @@
     "updateBuildableProjectDepsInPackageJson": {
       "type": "boolean",
       "description": "Whether to update the buildable project dependencies in the build output package.json.",
-      "default": false
+      "default": false,
+      "x-deprecated": "Configure the project to use the '@nx/dependency-checks' ESLint rule instead (https://nx.dev/packages/eslint-plugin/documents/dependency-checks). It will be removed in v17."
     },
     "buildableProjectDepsInPackageJsonType": {
       "type": "string",
       "description": "When `updateBuildableProjectDepsInPackageJson` is `true`, this adds dependencies to either `peerDependencies` or `dependencies`.",
       "enum": ["dependencies", "peerDependencies"],
-      "default": "peerDependencies"
+      "default": "peerDependencies",
+      "x-deprecated": "Configure the '@nx/dependency-checks' ESLint rule instead (https://nx.dev/packages/eslint-plugin/documents/dependency-checks). It will be removed in v17."
     },
     "tailwindConfig": {
       "type": "string",
diff --git a/packages/angular/src/executors/package/schema.d.ts b/packages/angular/src/executors/package/schema.d.ts
index abe918b1ac..3a740b437e 100644
--- a/packages/angular/src/executors/package/schema.d.ts
+++ b/packages/angular/src/executors/package/schema.d.ts
@@ -1,8 +1,18 @@
 export interface BuildAngularLibraryExecutorOptions {
   project: string;
+  /**
+   * @deprecated Configure the project to use the `@nx/dependency-checks` ESLint
+   * rule instead (https://nx.dev/packages/eslint-plugin/documents/dependency-checks).
+   * It will be removed in v17.
+   */
   buildableProjectDepsInPackageJsonType?: 'dependencies' | 'peerDependencies';
   tailwindConfig?: string;
   tsConfig?: string;
+  /**
+   * @deprecated Configure the project to use the `@nx/dependency-checks` ESLint
+   * rule instead (https://nx.dev/packages/eslint-plugin/documents/dependency-checks).
+   * It will be removed in v17.
+   */
   updateBuildableProjectDepsInPackageJson?: boolean;
   watch?: boolean;
 }
diff --git a/packages/angular/src/executors/package/schema.json b/packages/angular/src/executors/package/schema.json
index 1279a11875..303141dbcf 100644
--- a/packages/angular/src/executors/package/schema.json
+++ b/packages/angular/src/executors/package/schema.json
@@ -13,11 +13,7 @@
     },
     {
       "name": "Updating Project Dependencies for Publishable Library",
-      "keys": [
-        "project",
-        "updateBuildableProjectDepsInPackageJson",
-        "buildableProjectDepsInPackageJsonType"
-      ]
+      "keys": ["project"]
     }
   ],
   "properties": {
@@ -40,13 +36,15 @@
     "updateBuildableProjectDepsInPackageJson": {
       "type": "boolean",
       "description": "Whether to update the buildable project dependencies in the build output package.json.",
-      "default": false
+      "default": false,
+      "x-deprecated": "Configure the project to use the '@nx/dependency-checks' ESLint rule instead (https://nx.dev/packages/eslint-plugin/documents/dependency-checks). It will be removed in v17."
     },
     "buildableProjectDepsInPackageJsonType": {
       "type": "string",
       "description": "When `updateBuildableProjectDepsInPackageJson` is `true`, this adds dependencies to either `peerDependencies` or `dependencies`.",
       "enum": ["dependencies", "peerDependencies"],
-      "default": "peerDependencies"
+      "default": "peerDependencies",
+      "x-deprecated": "Configure the project to use the '@nx/dependency-checks' ESLint rule instead (https://nx.dev/packages/eslint-plugin/documents/dependency-checks). It will be removed in v17."
     },
     "tailwindConfig": {
       "type": "string",
diff --git a/packages/esbuild/src/executors/esbuild/esbuild.impl.ts b/packages/esbuild/src/executors/esbuild/esbuild.impl.ts
index 239b74828b..91109065b7 100644
--- a/packages/esbuild/src/executors/esbuild/esbuild.impl.ts
+++ b/packages/esbuild/src/executors/esbuild/esbuild.impl.ts
@@ -1,7 +1,7 @@
 import 'dotenv/config';
 import * as chalk from 'chalk';
 import type { ExecutorContext } from '@nx/devkit';
-import { cacheDir, joinPathFragments, logger } from '@nx/devkit';
+import { cacheDir, joinPathFragments, logger, stripIndents } from '@nx/devkit';
 import {
   copyAssets,
   copyPackageJson,
@@ -74,6 +74,13 @@ export async function* esbuildExecutor(
 
   let packageJsonResult;
   if (options.generatePackageJson) {
+    if (context.projectGraph.nodes[context.projectName].type !== 'app') {
+      logger.warn(
+        stripIndents`The project ${context.projectName} is using the 'generatePackageJson' option which is deprecated for library projects. It should only be used for applications.
+        For libraries, configure the project to use the '@nx/dependency-checks' ESLint rule instead (https://nx.dev/packages/eslint-plugin/documents/dependency-checks).`
+      );
+    }
+
     const cpjOptions: CopyPackageJsonOptions = {
       ...options,
       // TODO(jack): make types generate with esbuild
diff --git a/packages/js/src/executors/swc/schema.json b/packages/js/src/executors/swc/schema.json
index 6b356438d8..07c7c2ac44 100644
--- a/packages/js/src/executors/swc/schema.json
+++ b/packages/js/src/executors/swc/schema.json
@@ -69,13 +69,15 @@
     "updateBuildableProjectDepsInPackageJson": {
       "type": "boolean",
       "description": "Whether to update the buildable project dependencies in the build output package.json.",
-      "default": false
+      "default": false,
+      "x-deprecated": "Configure the project to use the '@nx/dependency-checks' ESLint rule instead (https://nx.dev/packages/eslint-plugin/documents/dependency-checks). It will be removed in v17."
     },
     "buildableProjectDepsInPackageJsonType": {
       "type": "string",
       "description": "When `updateBuildableProjectDepsInPackageJson` is `true`, this adds dependencies to either `peerDependencies` or `dependencies`.",
       "enum": ["dependencies", "peerDependencies"],
-      "default": "peerDependencies"
+      "default": "peerDependencies",
+      "x-deprecated": "Configure the project to use the '@nx/dependency-checks' ESLint rule instead (https://nx.dev/packages/eslint-plugin/documents/dependency-checks). It will be removed in v17."
     },
     "external": {
       "description": "A list projects to be treated as external. This feature is experimental",
diff --git a/packages/js/src/executors/tsc/schema.json b/packages/js/src/executors/tsc/schema.json
index 03078862a8..1e0552ce4b 100644
--- a/packages/js/src/executors/tsc/schema.json
+++ b/packages/js/src/executors/tsc/schema.json
@@ -57,13 +57,15 @@
     "updateBuildableProjectDepsInPackageJson": {
       "type": "boolean",
       "description": "Whether to update the buildable project dependencies in the build output package.json.",
-      "default": false
+      "default": false,
+      "x-deprecated": "Configure the project to use the '@nx/dependency-checks' ESLint rule instead (https://nx.dev/packages/eslint-plugin/documents/dependency-checks). It will be removed in v17."
     },
     "buildableProjectDepsInPackageJsonType": {
       "type": "string",
       "description": "When `updateBuildableProjectDepsInPackageJson` is `true`, this adds dependencies to either `peerDependencies` or `dependencies`.",
       "enum": ["dependencies", "peerDependencies"],
-      "default": "peerDependencies"
+      "default": "peerDependencies",
+      "x-deprecated": "Configure the project to use the '@nx/dependency-checks' ESLint rule instead (https://nx.dev/packages/eslint-plugin/documents/dependency-checks). It will be removed in v17."
     },
     "external": {
       "description": "A list projects to be treated as external. This feature is experimental",
diff --git a/packages/js/src/utils/schema.d.ts b/packages/js/src/utils/schema.d.ts
index fec4d02bce..b07b790e4e 100644
--- a/packages/js/src/utils/schema.d.ts
+++ b/packages/js/src/utils/schema.d.ts
@@ -42,7 +42,17 @@ export interface ExecutorOptions {
   watch: boolean;
   clean?: boolean;
   transformers: TransformerEntry[];
+  /**
+   * @deprecated Configure the project to use the `@nx/dependency-checks` ESLint
+   * rule instead (https://nx.dev/packages/eslint-plugin/documents/dependency-checks).
+   * It will be removed in v17.
+   */
   updateBuildableProjectDepsInPackageJson?: boolean;
+  /**
+   * @deprecated Configure the project to use the `@nx/dependency-checks` ESLint
+   * rule instead (https://nx.dev/packages/eslint-plugin/documents/dependency-checks).
+   * It will be removed in v17.
+   */
   buildableProjectDepsInPackageJsonType?: 'dependencies' | 'peerDependencies';
   external?: 'all' | 'none' | string[];
   externalBuildTargets?: string[];
diff --git a/packages/rollup/src/executors/rollup/schema.d.ts b/packages/rollup/src/executors/rollup/schema.d.ts
index 750d186e3a..9a08e09638 100644
--- a/packages/rollup/src/executors/rollup/schema.d.ts
+++ b/packages/rollup/src/executors/rollup/schema.d.ts
@@ -24,7 +24,17 @@ export interface RollupExecutorOptions {
   rollupConfig?: string | string[];
   watch?: boolean;
   assets?: any[];
+  /**
+   * @deprecated Configure the project to use the `@nx/dependency-checks` ESLint
+   * rule instead (https://nx.dev/packages/eslint-plugin/documents/dependency-checks).
+   * It will be removed in v17.
+   */
   updateBuildableProjectDepsInPackageJson?: boolean;
+  /**
+   * @deprecated Configure the project to use the `@nx/dependency-checks` ESLint
+   * rule instead (https://nx.dev/packages/eslint-plugin/documents/dependency-checks).
+   * It will be removed in v17.
+   */
   buildableProjectDepsInPackageJsonType?: 'dependencies' | 'peerDependencies';
   deleteOutputPath?: boolean;
   format?: string[];
diff --git a/packages/rollup/src/executors/rollup/schema.json b/packages/rollup/src/executors/rollup/schema.json
index c30f11f6d1..3a0e4626e3 100644
--- a/packages/rollup/src/executors/rollup/schema.json
+++ b/packages/rollup/src/executors/rollup/schema.json
@@ -5,19 +5,6 @@
   "description": "Packages a library for different web usages (ESM, CommonJS).",
   "cli": "nx",
   "type": "object",
-  "presets": [
-    {
-      "name": "Including Dependencies in package.json",
-      "keys": [
-        "main",
-        "outputPath",
-        "project",
-        "tsConfig",
-        "buildableProjectDepsInPackageJsonType",
-        "updateBuildableProjectDepsInPackageJson"
-      ]
-    }
-  ],
   "properties": {
     "project": {
       "type": "string",
@@ -92,13 +79,15 @@
     "updateBuildableProjectDepsInPackageJson": {
       "type": "boolean",
       "description": "Update buildable project dependencies in `package.json`.",
-      "default": false
+      "default": false,
+      "x-deprecated": "Configure the project to use the '@nx/dependency-checks' ESLint rule instead (https://nx.dev/packages/eslint-plugin/documents/dependency-checks). It will be removed in v17."
     },
     "buildableProjectDepsInPackageJsonType": {
       "type": "string",
       "description": "When `updateBuildableProjectDepsInPackageJson` is `true`, this adds dependencies to either `peerDependencies` or `dependencies`.",
       "enum": ["dependencies", "peerDependencies"],
-      "default": "peerDependencies"
+      "default": "peerDependencies",
+      "x-deprecated": "Configure the project to use the '@nx/dependency-checks' ESLint rule instead (https://nx.dev/packages/eslint-plugin/documents/dependency-checks). It will be removed in v17."
     },
     "rollupConfig": {
       "oneOf": [
diff --git a/packages/vite/src/executors/build/build.impl.ts b/packages/vite/src/executors/build/build.impl.ts
index 015177879c..1ec6aea2db 100644
--- a/packages/vite/src/executors/build/build.impl.ts
+++ b/packages/vite/src/executors/build/build.impl.ts
@@ -1,5 +1,10 @@
 import 'dotenv/config';
-import { ExecutorContext, writeJsonFile } from '@nx/devkit';
+import {
+  ExecutorContext,
+  logger,
+  stripIndents,
+  writeJsonFile,
+} from '@nx/devkit';
 import { build, InlineConfig, mergeConfig } from 'vite';
 import {
   getProjectTsConfigPath,
@@ -52,6 +57,13 @@ export async function* viteBuildExecutor(
 
   // Generate a package.json if option has been set.
   if (options.generatePackageJson) {
+    if (context.projectGraph.nodes[context.projectName].type !== 'app') {
+      logger.warn(
+        stripIndents`The project ${context.projectName} is using the 'generatePackageJson' option which is deprecated for library projects. It should only be used for applications.
+        For libraries, configure the project to use the '@nx/dependency-checks' ESLint rule instead (https://nx.dev/packages/eslint-plugin/documents/dependency-checks).`
+      );
+    }
+
     const builtPackageJson = createPackageJson(
       context.projectName,
       context.projectGraph,
diff --git a/packages/webpack/src/executors/webpack/webpack.impl.ts b/packages/webpack/src/executors/webpack/webpack.impl.ts
index 7398273068..68516586e0 100644
--- a/packages/webpack/src/executors/webpack/webpack.impl.ts
+++ b/packages/webpack/src/executors/webpack/webpack.impl.ts
@@ -1,5 +1,5 @@
 import 'dotenv/config';
-import { ExecutorContext, logger } from '@nx/devkit';
+import { ExecutorContext, logger, stripIndents } from '@nx/devkit';
 import { eachValueFrom } from '@nx/devkit/src/utils/rxjs-for-await';
 import type { Configuration, Stats } from 'webpack';
 import { from, of } from 'rxjs';
@@ -141,6 +141,13 @@ export async function* webpackExecutor(
     deleteOutputDir(context.root, options.outputPath);
   }
 
+  if (options.generatePackageJson && metadata.projectType !== 'application') {
+    logger.warn(
+      stripIndents`The project ${context.projectName} is using the 'generatePackageJson' option which is deprecated for library projects. It should only be used for applications.
+        For libraries, configure the project to use the '@nx/dependency-checks' ESLint rule instead (https://nx.dev/packages/eslint-plugin/documents/dependency-checks).`
+    );
+  }
+
   const configs = await getWebpackConfigs(options, context);
 
   return yield* eachValueFrom(